Tutorial
Practical command-line guide for MVP input formats, analysis workflows, meta-analysis, UCALM and visualization.
Tutorial Overview
Choose a Chapter
The tutorial is split into focused chapters so each page stays scannable. New users can start with Introduction, then move through input formats, analysis workflows and result interpretation.
Section 1
Introduction
Core concepts, first run, feature map, command structure, version and help checks.
Section 2
Input File Formats
Phenotype, genotype, covariate, PC, population, GRM, summary statistic and filter files.
Section 3
Running GWAS
Common GLM, MLM, PCA, GRM, clustering, GPU, benchmark and plotting workflows.
Section 4
Population clustering
Population structure, PCA-based clustering, HDBSCAN workflows and cluster output.
Section 5
Meta-analysis
Summary statistics input, method selection, recipes, subgroup GWAS and meta output.
Section 6
UCALM
Individual-level and summary-statistics UCALM workflows, outputs and practical notes.